Public Sequence Resource

Pangenome analysis of SARS-CoV-2
Here are the Latest results
Validated data is in the Validated sequences subproject.
The latest analysis results are in the Analysis runs subproject.
To add your own data, install the uploader tool:
https://github.com/arvados/bh20-seq-resource
Then run:
$ bh20-seq-uploader sequence.(fastq|fasta) metadata.yaml
If the data is accepted, it will automatically start a new analysis run with the new data included.
The analysis workflows are the CWL from from here: https://github.com/hpobio-lab/viral-analysis
To update the analysis workflow from source do this:
$ arvados-cwl-runner --project-uuid lugli-j7d0g-5hswinmpyho8dju --update-workflow=lugli-7fd4e-mqfu9y3ofnpnho1 pangenome-generate.cwl